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  • API Reference
    • main
      • Module Contents
        • main()
        • parser
        • args
        • opt
    • core
      • Submodules
        • core.BasePredictor
        • core.BaseTrainer
        • core.Baseline
        • core.MEDIAR
        • core.utils
    • spacr
      • Submodules
        • spacr.app_annotate
        • spacr.app_classify
        • spacr.app_make_masks
        • spacr.app_mask
        • spacr.app_measure
        • spacr.app_sequencing
        • spacr.app_umap
        • spacr.chat_bot
        • spacr.core
        • spacr.deep_spacr
        • spacr.gui
        • spacr.gui_core
        • spacr.gui_elements
        • spacr.gui_utils
        • spacr.io
        • spacr.logger
        • spacr.measure
        • spacr.mediar
        • spacr.ml
        • spacr.openai
        • spacr.plot
        • spacr.sequencing
        • spacr.settings
        • spacr.sim
        • spacr.sp_stats
        • spacr.spacr_cellpose
        • spacr.submodules
        • spacr.timelapse
        • spacr.toxo
        • spacr.utils
        • spacr.version
    • predict
      • Module Contents
        • main()
        • parser
        • args
        • opt
    • evaluate
      • Module Contents
        • main()
    • SetupDict
      • Module Contents
        • TRAINER
        • OPTIMIZER
        • SCHEDULER
    • train_tools
      • Submodules
        • train_tools.data_utils
        • train_tools.measures
        • train_tools.models
        • train_tools.utils
    • generate_mapping
      • Module Contents
        • public_paths_labeled()
        • official_paths_labeled()
        • official_paths_tuning()
        • add_mapping_to_json()
        • parser
spacr
  • Overview: module code

All modules for which code is available

  • SetupDict
  • core.BasePredictor
  • core.BaseTrainer
  • core.Baseline.Predictor
  • core.Baseline.Trainer
  • core.Baseline.utils
  • core.MEDIAR.EnsemblePredictor
  • core.MEDIAR.Predictor
  • core.MEDIAR.Trainer
  • core.MEDIAR.utils
  • core.utils
  • evaluate
  • generate_mapping
  • main
  • predict
  • spacr.app_annotate
  • spacr.app_classify
  • spacr.app_make_masks
  • spacr.app_mask
  • spacr.app_measure
  • spacr.app_sequencing
  • spacr.app_umap
  • spacr.chat_bot
  • spacr.core
  • spacr.deep_spacr
  • spacr.gui
  • spacr.gui_core
  • spacr.gui_elements
  • spacr.gui_utils
  • spacr.io
  • spacr.logger
  • spacr.measure
  • spacr.mediar
  • spacr.ml
  • spacr.plot
  • spacr.sequencing
  • spacr.settings
  • spacr.sim
  • spacr.sp_stats
  • spacr.spacr_cellpose
  • spacr.submodules
  • spacr.timelapse
  • spacr.toxo
  • spacr.utils
  • spacr.version
  • train_tools.data_utils.custom.CellAware
  • train_tools.data_utils.custom.LoadImage
  • train_tools.data_utils.custom.NormalizeImage
  • train_tools.data_utils.datasetter
  • train_tools.data_utils.transforms
  • train_tools.data_utils.utils
  • train_tools.measures
  • train_tools.models.MEDIARFormer
  • train_tools.utils

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