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  • API Reference
    • main
      • Module Contents
        • main()
        • parser
        • args
        • opt
    • core
      • Submodules
        • core.BasePredictor
        • core.BaseTrainer
        • core.Baseline
        • core.MEDIAR
        • core.utils
    • spacr
      • Submodules
        • spacr.app_annotate
        • spacr.app_classify
        • spacr.app_make_masks
        • spacr.app_mask
        • spacr.app_measure
        • spacr.app_sequencing
        • spacr.app_umap
        • spacr.chat_bot
        • spacr.core
        • spacr.deep_spacr
        • spacr.gui
        • spacr.gui_core
        • spacr.gui_elements
        • spacr.gui_utils
        • spacr.io
        • spacr.logger
        • spacr.measure
        • spacr.mediar
        • spacr.ml
        • spacr.openai
        • spacr.plot
        • spacr.sequencing
        • spacr.settings
        • spacr.sim
        • spacr.sp_stats
        • spacr.spacr_cellpose
        • spacr.submodules
        • spacr.timelapse
        • spacr.toxo
        • spacr.utils
        • spacr.version
    • predict
      • Module Contents
        • main()
        • parser
        • args
        • opt
    • evaluate
      • Module Contents
        • main()
    • SetupDict
      • Module Contents
        • TRAINER
        • OPTIMIZER
        • SCHEDULER
    • train_tools
      • Submodules
        • train_tools.data_utils
        • train_tools.measures
        • train_tools.models
        • train_tools.utils
    • generate_mapping
      • Module Contents
        • public_paths_labeled()
        • official_paths_labeled()
        • official_paths_tuning()
        • add_mapping_to_json()
        • parser
spacr
  • API Reference
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API ReferenceΒΆ

This page contains auto-generated API reference documentation [1].

  • main
  • core
    • core.BasePredictor
    • core.BaseTrainer
    • core.Baseline
      • core.Baseline.Predictor
      • core.Baseline.Trainer
      • core.Baseline.utils
    • core.MEDIAR
      • core.MEDIAR.EnsemblePredictor
      • core.MEDIAR.Predictor
      • core.MEDIAR.Trainer
      • core.MEDIAR.utils
    • core.utils
  • spacr
    • spacr.app_annotate
    • spacr.app_classify
    • spacr.app_make_masks
    • spacr.app_mask
    • spacr.app_measure
    • spacr.app_sequencing
    • spacr.app_umap
    • spacr.chat_bot
    • spacr.core
    • spacr.deep_spacr
    • spacr.gui
    • spacr.gui_core
    • spacr.gui_elements
    • spacr.gui_utils
    • spacr.io
    • spacr.logger
    • spacr.measure
    • spacr.mediar
    • spacr.ml
    • spacr.openai
    • spacr.plot
    • spacr.sequencing
    • spacr.settings
    • spacr.sim
    • spacr.sp_stats
    • spacr.spacr_cellpose
    • spacr.submodules
    • spacr.timelapse
    • spacr.toxo
    • spacr.utils
    • spacr.version
  • predict
  • evaluate
  • SetupDict
  • train_tools
    • train_tools.data_utils
      • train_tools.data_utils.custom
        • train_tools.data_utils.custom.CellAware
        • train_tools.data_utils.custom.LoadImage
        • train_tools.data_utils.custom.NormalizeImage
      • train_tools.data_utils.datasetter
      • train_tools.data_utils.transforms
      • train_tools.data_utils.utils
    • train_tools.measures
    • train_tools.models
      • train_tools.models.MEDIARFormer
    • train_tools.utils
  • generate_mapping
[1]

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