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spaCR 1.5.1.0 documentation
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spaCR 1.5.1.0 documentation
  • Installer guide
  • System requirements
  • Choose a workflow after installation
  • Installer archive
  • Capabilities
  • Make Masks: editing, detection and measurement
  • Train a Cellpose model
  • Process images with a point-spread function
  • Recruitment: compartment ratios and channel identity
  • Image quality before segmentation
  • Host–Pathogen Analysis
  • Plaque Assay: fields, figures and reviewed conditions
  • Timeflows training data and supervision
  • Python API quickstart
  • Export measurements to AnnData
  • Where a setting goes
  • Model zoo
  • Language
  • Setting animation gallery
  • Checkpoint and resume
  • Reproducibility manifests
  • Unified run history
  • Plate and batch-effect correction
  • Classifier evaluation workbench
  • Plate-aware guide permutation analysis
  • Explain CV models and investigate hits
  • Resumable multi-objective UMAP search
  • Remote and distributed execution
  • spaCR plugin SDK
  • Train/test leakage audit
  • Threading and cancellation audit
  • Database concurrency audit
  • API reference
    • spacr
      • spacr.api
      • spacr.core
      • spacr.measure
      • spacr.deep_spacr
      • spacr.sequencing
      • spacr.ml
      • spacr.artifacts
      • spacr.settings
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