Starplast

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Explore a gene, predict a trait or compare a screen using the guided workflows in the Tools menu.

Explore gene evidence and screen results in Toxoplasma gondii and Plasmodium falciparum. Starplast combines gene maps with expression, fitness, localization, interaction, and literature evidence.

pip install starplast
starplast

• User guide: import results, explore genes, and understand settings.
• Python API: work with tables, embeddings, and analyses in scripts.
• Module reference: generated signatures and docstrings.
• Tutorials: five task walkthroughs, each as a GUI tour and a notebook, plus one long guide to every feature.
• Dataset catalogue: source records, assay types, and coverage.
• Space packs: validate and install versioned organism data outside the wheel.
• Strategy calibration: how well each strategy recovers held-out knowledge, over a grid of its settings, with intervals.
• Strategy cards: every strategy as the Strategies tab shows it -- the same four bars (better than chance, reach, two plain task metrics), what its test does, and one real failure beside one real success.
• Strategy scorecards: every strategy's standard metrics for its task (accuracy, macro F1, kappa, MCC, AUROC, AUPRC, R-precision, Spearman, R-squared, ARI, ...), each metric and technique explained.
• The integrated neighbour space: one graph from every layer, and the three nulls that decide whether its edges mean anything.
• 0.43 benchmark: held-out model comparisons, controls and limitations.
• Scientific roadmap: inference goals, validation priorities, and proposed improvements.
• Repository review: architecture and scientific limitations.
• Protein sequence representations: frozen ESM features and regeneration.
• Local AF3 structures: index models and interpret confidence features.
• Forty logo directions: eight families, light/dark previews and downloadable SVGs.
• Ten logo refinements: compare and download SVG proposals.
• Development and releases: build, test, and publish.

CDPK1 (TGME49_301440) and its five neighbours emit light. Lines show attention-corrected literature co-mention links; colours show compartments. This animation shows the pre-0.43 layout. View a still image.